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    LOC4337441 K(+) efflux antiporter 2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337441, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337441
    Gene description
    K(+) efflux antiporter 2, chloroplastic
    Locus tag
    OSNPB_040682800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 40.3), roots after flowering (RPKM 35.8) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (35380536..35389542, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (34860415..34869589, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene putative threonine aspartase Neighboring gene uncharacterized LOC136356383 Neighboring gene DNA mismatch repair protein MSH3 Neighboring gene pre-mRNA cleavage factor Im 25 kDa subunit 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables potassium:proton antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in potassium ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    K(+) efflux antiporter 2, chloroplastic
    Names
    Os04g0682800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      35380536..35389542 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780727.3 → XP_015636213.1  K(+) efflux antiporter 2, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0WGH1, B7F7U0, Q7XPW1
      Conserved Domains (2) summary
      PRK02224
      Location:101 → 389
      PRK02224; DNA double-strand break repair Rad50 ATPase
      PRK03562
      Location:557 → 1079
      PRK03562; glutathione-regulated potassium-efflux system protein KefC; Provisional
    Nucleotide Protein
    Heading Accession and Version

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