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    LOC4344144 uncharacterized LOC4344144 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344144, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344144
    Gene description
    uncharacterized LOC4344144
    Locus tag
    OSNPB_070655900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4344144 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (27806858..27811726)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (27579267..27584203)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357216 Neighboring gene probable pectinesterase 66 Neighboring gene uncharacterized LOC4344143 Neighboring gene protein trichome birefringence-like 10 Neighboring gene uncharacterized LOC4344145

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4344144
    Names
    Os07g0655900
    P0018C07.124
    TVP38/TMEM64 family membrane protein slr0305
    integral membrane protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      27806858..27811726
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789431.3 → XP_015644917.1  uncharacterized protein LOC4344144

      UniProtKB/TrEMBL
      A0A0P0X9T7, A2YPG8, Q0D409, Q8H3D8
      Conserved Domains (1) summary
      COG0398
      Location:37 → 188
      TVP38; Uncharacterized membrane protein YdjX, TVP38/TMEM64 family, SNARE-associated domain [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

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