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    LOC4351779 2-dehydro-3-deoxyphosphooctonate aldolase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351779, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4351779
    Gene description
    2-dehydro-3-deoxyphosphooctonate aldolase 1
    Locus tag
    OSNPB_120210800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 28.2), flower buds (RPKM 23.7) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (5835285..5841078)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (5801427..5807236)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278307 Neighboring gene uncharacterized LOC136354646 Neighboring gene uncharacterized LOC107279741 Neighboring gene uncharacterized LOC136354772

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A network of rice genes associated with stress response and seed development. Cooper B, et al. Proc Natl Acad Sci U S A, 2003 Apr 15. PMID 12684538, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3-deoxy-8-phosphooctulonate synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in monosaccharide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    2-dehydro-3-deoxyphosphooctonate aldolase 1
    Names
    Os12g0210800
    putative 2-dehydro-3-deoxyphosphooctonate aldolase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      5835285..5841078
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763128.2 → XP_015618614.1  2-dehydro-3-deoxyphosphooctonate aldolase 1

      UniProtKB/TrEMBL
      A0A0P0Y823, Q0IPE5, Q84P87
      Conserved Domains (1) summary
      PLN03033
      Location:2 → 291
      PLN03033; 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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