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    LOC4348481 uncharacterized LOC4348481 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348481, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4348481
    Gene description
    uncharacterized LOC4348481
    Locus tag
    OSNPB_100372800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 18.5), flower buds (RPKM 8.1) and 4 other tissues See more
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    Genomic context

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    See LOC4348481 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (12405837..12416466, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (11807239..11817855, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene flocculation protein FLO11 Neighboring gene uncharacterized LOC112936617 Neighboring gene uncharacterized LOC4348482 Neighboring gene pre-mRNA splicing factor SR-like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis involved in protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4348481
    Names
    Os10g0372800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      12405837..12416466 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066304728.1 → XP_066160825.1  uncharacterized protein LOC4348481 isoform X8

      UniProtKB/TrEMBL
      A2Z6K7

    2. XM_066304726.1 → XP_066160823.1  uncharacterized protein LOC4348481 isoform X6

      UniProtKB/TrEMBL
      A2Z6K7

    3. XM_066304727.1 → XP_066160824.1  uncharacterized protein LOC4348481 isoform X7

      UniProtKB/TrEMBL
      A2Z6K7

    4. XM_066304725.1 → XP_066160822.1  uncharacterized protein LOC4348481 isoform X5

      UniProtKB/TrEMBL
      A2Z6K7

    5. XM_066304724.1 → XP_066160821.1  uncharacterized protein LOC4348481 isoform X4

      UniProtKB/TrEMBL
      A2Z6K7

    6. XM_015757362.3 → XP_015612848.1  uncharacterized protein LOC4348481 isoform X2

      UniProtKB/TrEMBL
      A2Z6K7
      Conserved Domains (1) summary
      cd02619
      Location:546 → 818
      Peptidase_C1; C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some ...

    7. XM_066304723.1 → XP_066160820.1  uncharacterized protein LOC4348481 isoform X3

      UniProtKB/TrEMBL
      A2Z6K7

    8. XM_066304722.1 → XP_066160819.1  uncharacterized protein LOC4348481 isoform X1

      UniProtKB/TrEMBL
      A2Z6K7

    9. XM_066304729.1 → XP_066160826.1  uncharacterized protein LOC4348481 isoform X9

      UniProtKB/TrEMBL
      A2Z6K7

    RNA

    1. XR_010737002.1 RNA Sequence

    2. XR_010737003.1 RNA Sequence

    3. XR_010737004.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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