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    LOC4336508 uncharacterized LOC4336508 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336508, updated on 17-Jul-2024

    Summary

    Gene symbol
    LOC4336508
    Gene description
    uncharacterized LOC4336508
    Locus tag
    OSNPB_040534300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 6.4), leaves before flowering (RPKM 5.7) and 6 other tissues See more
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    Genomic context

    See LOC4336508 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (27213087..27216314)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (26709231..26712484)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356249 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g63430 Neighboring gene vesicle-associated protein 1-2 Neighboring gene uncharacterized LOC4336510

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in spindle pole body duplication IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in microtubule organizing center IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    uncharacterized protein LOC4336508
    Names
    Os04g0534300

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      27213087..27216314
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780750.3XP_015636236.1  uncharacterized protein LOC4336508

      UniProtKB/TrEMBL
      A2XVV9, A3AVW6, Q01IH6, Q7XU75
      Conserved Domains (1) summary
      cd00051
      Location:222276
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...