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    LOC4345665 probable apyrase 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345665, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4345665
    Gene description
    probable apyrase 6
    Locus tag
    OSNPB_080436100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 20.1), flowers (RPKM 16.5) and 6 other tissues See more
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    Genomic context

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    See LOC4345665 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (21328012..21332072)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (21190181..21194323)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene chlorophyll a-b binding protein P4, chloroplastic Neighboring gene polypyrimidine tract-binding protein homolog 1 Neighboring gene uncharacterized LOC4345666 Neighboring gene zinc finger A20 and AN1 domain-containing stress-associated protein 12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable apyrase 5; probable apyrase 6
    Names
    OSJNBa0016C11.3
    Os08g0436100
    putative ectonucleoside triphosphate diphosphohydrolase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      21328012..21332072
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026027648.2 → XP_025883433.1  probable apyrase 6 isoform X1

      Conserved Domains (1) summary
      cl17037
      Location:71 → 473
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

    2. XM_015795592.3 → XP_015651078.1  probable apyrase 5 isoform X2

      UniProtKB/TrEMBL
      A0A0N7KPX0, B8BB17, Q6Z543
      Conserved Domains (1) summary
      cl17037
      Location:71 → 473
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily
    Nucleotide Protein
    Heading Accession and Version

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