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    LOC4337193 VQ motif-containing protein 11 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337193, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337193
    Gene description
    VQ motif-containing protein 11
    Locus tag
    OSNPB_040645200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4337193 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (33358982..33359877, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (32852066..32853422, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene synaptotagmin-5 Neighboring gene protein REDUCED CHLOROPLAST COVERAGE 3 Neighboring gene uncharacterized LOC4337194 Neighboring gene uncharacterized vacuolar membrane protein YML018C Neighboring gene uncharacterized LOC9266804

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    VQ motif-containing protein 11
    Names
    Os04g0645200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      33358982..33359877 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779126.3 → XP_015634612.1  VQ motif-containing protein 11

      UniProtKB/TrEMBL
      A2XY78, A3AY04, J3JRT2, Q0J9K9, Q7FB34
      Conserved Domains (1) summary
      pfam05678
      Location:32 → 54
      VQ; VQ motif
    Nucleotide Protein
    Heading Accession and Version

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