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    LOC4328094 pentatricopeptide repeat-containing protein At2g01860 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328094, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328094
    Gene description
    pentatricopeptide repeat-containing protein At2g01860
    Locus tag
    OSNPB_020118000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1217_F02.3; OJ1442_E05.34
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    Genomic context

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    See LOC4328094 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (945101..948036, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (938373..941567, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene autophagy protein 5-like Neighboring gene protein trichome birefringence-like 12 Neighboring gene probable serine/threonine-protein kinase PIX13 Neighboring gene sialyltransferase-like protein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At2g01860
    Names
    Os02g0118000
    putative pentatricopeptide (PPR) repeat-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      945101..948036 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767736.3 → XP_015623222.1  pentatricopeptide repeat-containing protein At2g01860

      UniProtKB/TrEMBL
      A2X060, Q6ZGL2, Q6ZH48
      Conserved Domains (2) summary
      PLN03081
      Location:355 → 480
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      sd00004
      Location:366 → 394
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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