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    LOC4336844 oligopeptide transporter 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336844, updated on 17-Jul-2024

    Summary

    Gene symbol
    LOC4336844
    Gene description
    oligopeptide transporter 4
    Locus tag
    OSNPB_040594800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Restricted expression toward flowers (RPKM 1.8) See more
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    Genomic context

    See LOC4336844 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (30568794..30571986)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (30062396..30065581)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351206 Neighboring gene uncharacterized LOC107277574 Neighboring gene U1 spliceosomal RNA Neighboring gene U1 spliceosomal RNA

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oligopeptide transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    oligopeptide transporter 4
    Names
    Os04g0594800

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      30568794..30571986
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779784.3XP_015635270.1  oligopeptide transporter 4

      UniProtKB/TrEMBL
      A3AGG1, B7EIF2, Q5JQD8, Q7X6R1
      Conserved Domains (1) summary
      cl14607
      Location:17699
      OPT; OPT oligopeptide transporter protein