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    LOC4338074 uncharacterized LOC4338074 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338074, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338074
    Gene description
    uncharacterized LOC4338074
    Locus tag
    OSNPB_050206200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Os05g0206300
    Expression
    Broad expression in flowers (RPKM 5.9), flower buds (RPKM 3.5) and 6 other tissues See more
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    Genomic context

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    See LOC4338074 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (6613850..6619004)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (6590696..6595332)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene aquaporin NIP1-3-like Neighboring gene uncharacterized LOC4338072 Neighboring gene protein GRAVITROPIC IN THE LIGHT 1-like Neighboring gene putative pentatricopeptide repeat-containing protein At1g53330

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4338074
    Names
    Os05g0206200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      6613850..6619004
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782696.3 → XP_015638182.1  uncharacterized protein LOC4338074 isoform X2

    2. XM_015782692.3 → XP_015638178.1  uncharacterized protein LOC4338074 isoform X1

    RNA

    1. XR_010741701.1 RNA Sequence

    2. XR_010741702.1 RNA Sequence

    3. XR_001545831.3 RNA Sequence

    4. XR_010741703.1 RNA Sequence

    Nucleotide Protein
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