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    LOC4332002 uncharacterized LOC4332002 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332002, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332002
    Gene description
    uncharacterized LOC4332002
    Locus tag
    OSNPB_030207200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 5.9), roots before flowering (RPKM 3.6) and 5 other tissues See more
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    Genomic context

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    See LOC4332002 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (5657069..5660015, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (5609825..5613202, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein RPS5 Neighboring gene disease resistance protein RPS2 Neighboring gene large ribosomal subunit protein mL43 Neighboring gene casein kinase II subunit alpha-2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in Golgi vesicle transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4332002
    Names
    Os03g0207200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      5657069..5660015 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772274.3 → XP_015627760.1  uncharacterized protein LOC4332002 isoform X2

      UniProtKB/TrEMBL
      A2XDR3, Q8H066
      Conserved Domains (1) summary
      pfam09177
      Location:19 → 118
      Syntaxin-6_N; Syntaxin 6, N-terminal

    2. XM_015772273.3 → XP_015627759.1  uncharacterized protein LOC4332002 isoform X1

      UniProtKB/TrEMBL
      A0A8J8XUH7, A2XDR3, B9F634, Q0DU50, Q10Q73, Q8H066
      Conserved Domains (1) summary
      cd21442
      Location:11 → 122
      SNARE_NTD_STX6-like; N-terminal domain of syntaxin-6 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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