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    LOC4331181 rRNA 2'-O-methyltransferase fibrillarin 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331181, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331181
    Gene description
    rRNA 2'-O-methyltransferase fibrillarin 2
    Locus tag
    OSNPB_020821800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1119_A01.10-1
    Expression
    Ubiquitous expression in flower buds (RPKM 71.8), mature seeds (RPKM 57.6) and 6 other tissues See more
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    Genomic context

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    See LOC4331181 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (35770297..35773477)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35271587..35274802)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene protein DETOXIFICATION 35 Neighboring gene transfer RNA leucine (anticodon CAA) Neighboring gene small nucleolar RNA snoR60 Neighboring gene small nucleolar RNA snoR60 Neighboring gene ATG8-interacting protein 1 Neighboring gene uncharacterized LOC4331183

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H2AQ104 methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables rRNA methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in box C/D sno(s)RNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of box C/D methylation guide snoRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rRNA 2'-O-methyltransferase fibrillarin 2
    Names
    Os02g0821800
    P0474F11.25-1
    mediator of RNA polymerase II transcription subunit 36a
    putative fibrillarin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      35770297..35773477
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767267.3 → XP_015622753.1  rRNA 2'-O-methyltransferase fibrillarin 2

      UniProtKB/TrEMBL
      A2XB50, A3ACS8, Q6K701
      Conserved Domains (1) summary
      PTZ00146
      Location:63 → 303
      PTZ00146; fibrillarin; Provisional
    Nucleotide Protein
    Heading Accession and Version

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