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    LOC4326347 IQ domain-containing protein IQM1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326347, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326347
    Gene description
    IQ domain-containing protein IQM1
    Locus tag
    OSNPB_010570800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsCaMBP
    Expression
    Biased expression in roots before flowering (RPKM 474.4), leaves before flowering (RPKM 39.0) and 1 other tissue See more
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    Genomic context

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    See LOC4326347 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (22470595..22473744, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (21900047..21903304, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281430 Neighboring gene carbamoyl-phosphate synthase large chain, chloroplastic-like Neighboring gene mitochondrial carrier protein CoAc1 Neighboring gene late embryogenesis abundant protein 19-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    IQ domain-containing protein IQM1
    Names
    B1114B07.32-1
    Os01g0570800
    calmodulin-binding protein
    putative calmodulin-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      22470595..22473744 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766931.3 → XP_015622417.1  IQ domain-containing protein IQM1 isoform X1

      UniProtKB/TrEMBL
      B1B5J2

    2. XM_015766932.2 → XP_015622418.1  IQ domain-containing protein IQM1 isoform X2

      UniProtKB/TrEMBL
      A0A0N7KD69, B1B5J2, Q0JLU0, Q656X7
    Nucleotide Protein
    Heading Accession and Version

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