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    LOC4342910 uncharacterized LOC4342910 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342910, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4342910
    Gene description
    uncharacterized LOC4342910
    Locus tag
    OSNPB_070274400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 50.6) and flower buds (RPKM 32.9) See more
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    Genomic context

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    See LOC4342910 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (10313822..10316844)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (10223465..10226227)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene putative metallophosphoesterase At3g03305 Neighboring gene uncharacterized LOC107275905 Neighboring gene uncharacterized LOC4342911 Neighboring gene serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B'

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4342910
    Names
    B1029H08.17
    OSJNBb0032G22.32
    Os07g0274400
    putative B12D protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      10313822..10316844
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066312253.1 → XP_066168350.1  uncharacterized protein LOC4342910

      UniProtKB/TrEMBL
      A3BIK3, B7EQS5, Q6YU38

    2. XM_015789727.3 → XP_015645213.1  uncharacterized protein LOC4342910

      UniProtKB/TrEMBL
      A3BIK3, B7EQS5, Q6YU38
      Conserved Domains (1) summary
      pfam06522
      Location:6 → 73
      B12D; NADH-ubiquinone reductase complex 1 MLRQ subunit
    Nucleotide Protein
    Heading Accession and Version

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