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    LOC4352270 disease resistance protein RPM1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352270, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4352270
    Gene description
    disease resistance protein RPM1
    Locus tag
    OSNPB_120500500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4352270 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (19532039..19536864, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (19043760..19048583, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354827 Neighboring gene probable L-type lectin-domain containing receptor kinase S.5 Neighboring gene vacuolar protein sorting-associated protein 26A Neighboring gene uncharacterized LOC136354729

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein RPM1
    Names
    Os12g0500500
    putative NB-ARC domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      19532039..19536864 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764150.3 → XP_015619636.1  disease resistance protein RPM1

      UniProtKB/TrEMBL
      A0A8J8XI52, A3CHL2, Q0IN78, Q2QQB5
      Conserved Domains (6) summary
      COG4886
      Location:571 → 778
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd14798
      Location:2 → 136
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      sd00033
      Location:584 → 606
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:183 → 464
      NB-ARC; NB-ARC domain
      pfam12799
      Location:606 → 644
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13191
      Location:181 → 313
      AAA_16; AAA ATPase domain
    Nucleotide Protein
    Heading Accession and Version

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