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    LOC4334405 glutamate dehydrogenase 1, mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334405, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4334405
    Gene description
    glutamate dehydrogenase 1, mitochondrial-like
    Locus tag
    OSNPB_030794500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GDH; GDH1; OsGDH1
    Expression
    Broad expression in roots before flowering (RPKM 66.4), flowers (RPKM 38.4) and 5 other tissues See more
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    Genomic context

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    See LOC4334405 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (34010025..34015319, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (33038055..33043340, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4334402 Neighboring gene uncharacterized LOC4334403 Neighboring gene uncharacterized LOC4334404 Neighboring gene small ribosomal subunit protein uS13z/uS13y/uS13x Neighboring gene 5'-3' exoribonuclease 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Localization of NAD-isocitrate dehydrogenase and glutamate dehydrogenase in rice roots: candidates for providing carbon skeletons to NADH-glutamate synthase. Abiko T, et al. Plant Cell Physiol, 2005 Oct. PMID 16120687
    2. Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library. Sasaki T, et al. Plant J, 1994 Oct. PMID 7987417
    3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glutamate dehydrogenase (NAD+) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glutamate catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glutamate dehydrogenase 1, mitochondrial
    Names
    OSJNBb0060J21.2
    OSNPB_030794500
    Os03g0794500
    NP_001389233.1
    NP_001389234.1
    XP_066164284.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402304.1 → NP_001389233.1  glutamate dehydrogenase 1, mitochondrial

      Status: VALIDATED

      Source sequence(s)
      CB670263, CB675586, CI539286, CI601070
      UniProtKB/Swiss-Prot
      A2XMV1, A3ANK4, Q852M0

    2. NM_001402305.1 → NP_001389234.1  glutamate dehydrogenase 1, mitochondrial

      Status: VALIDATED

      Source sequence(s)
      CB670263, CB675586, CI539286, CI614409
      UniProtKB/Swiss-Prot
      A2XMV1, A3ANK4, Q852M0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      34010025..34015319 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066308187.1 → XP_066164284.1  glutamate dehydrogenase 1, mitochondrial isoform X1

      UniProtKB/Swiss-Prot
      A2XMV1, A3ANK4, Q852M0
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q852M0.1 GenPept UniProtKB/Swiss-Prot:Q852M0

    Gene LinkOut

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