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    LOC4331159 thioredoxin-like 3-2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331159, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331159
    Gene description
    thioredoxin-like 3-2, chloroplastic
    Locus tag
    OSNPB_020819200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1202_E07.18
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    Genomic context

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    See LOC4331159 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (35657658..35660245)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35158773..35161536)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355151 Neighboring gene probable protein S-acyltransferase 15 Neighboring gene pumilio homolog 1 Neighboring gene P-loop NTPase domain-containing protein LPA1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thioredoxin-like 3-2, chloroplastic
    Names
    Os02g0819200
    putative Thioredoxin H-type

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      35657658..35660245
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767932.3 → XP_015623418.1  thioredoxin-like 3-2, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0VRB5, B8AEW4, Q6K9R2
      Conserved Domains (1) summary
      cd02947
      Location:83 → 185
      TRX_family; TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox ...
    Nucleotide Protein
    Heading Accession and Version

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