U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4337286 inositol-pentakisphosphate 2-kinase IPK1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337286, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4337286
    Gene description
    inositol-pentakisphosphate 2-kinase IPK1-like
    Locus tag
    OSNPB_040661200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    IPK1; OsIPK1; OsJ_16498
    Expression
    Broad expression in mature seeds (RPKM 70.3), milk grains (RPKM 56.9) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4337286 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (33735161..33739892, complement)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene protein NRT1/ PTR FAMILY 2.13 Neighboring gene heavy metal-associated isoprenylated plant protein 43 Neighboring gene protein HEAT INTOLERANT 4 Neighboring gene uncharacterized LOC107280786

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Development of low phytate rice by RNAi mediated seed-specific silencing of inositol 1,3,4,5,6-pentakisphosphate 2-kinase gene (IPK1). Ali N, et al. PLoS One, 2013. PMID 23844166, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables inositol pentakisphosphate 2-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in inositol phosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    inositol-pentakisphosphate 2-kinase IPK1
    Names
    Inositol-1,3,4,5,6-pentakisphosphate 2-kinase IPK1
    Ins(1,3,4,5,6)P5 2-kinase
    InsP5 2-kinase 1
    LOC_Os04g56580
    OSJNBa0015K02.18
    XP_015633432.1
    XP_015633433.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419910.1 → NP_001406839.1  inositol-pentakisphosphate 2-kinase IPK1

      Status: VALIDATED

      Source sequence(s)
      AK102842, CI080464, CI588616, CI642535
      UniProtKB/Swiss-Prot
      A0A0P0WFU5, B8AVX5, Q01JL1, Q7XQZ6

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      33735161..33739892 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777946.2 → XP_015633432.1  inositol-pentakisphosphate 2-kinase IPK1

      UniProtKB/Swiss-Prot
      A0A0P0WFU5, B8AVX5, Q01JL1, Q7XQZ6
      Conserved Domains (1) summary
      pfam06090
      Location:15 → 420
      Ins_P5_2-kin; Inositol-pentakisphosphate 2-kinase

    2. XM_015777947.2 → XP_015633433.1  inositol-pentakisphosphate 2-kinase IPK1

      UniProtKB/Swiss-Prot
      Q7XQZ6
      Conserved Domains (1) summary
      pfam06090
      Location:15 → 420
      Ins_P5_2-kin; Inositol-pentakisphosphate 2-kinase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XQZ6.1 GenPept UniProtKB/Swiss-Prot:Q7XQZ6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials