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    LOC4340462 bZIP transcription factor 46-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340462, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4340462
    Gene description
    bZIP transcription factor 46-like
    Locus tag
    OSNPB_060211200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0701E03.2
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    Genomic context

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    See LOC4340462 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (5844115..5848839)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (5677030..5682047)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene UDP-glycosyltransferase 73C4-like Neighboring gene putative glycine-rich cell wall structural protein 1 Neighboring gene sterol carrier protein 2 Neighboring gene scarecrow-like protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. OsAREB1, an ABRE-binding protein responding to ABA and glucose, has multiple functions in Arabidopsis. Jin XF, et al. BMB Rep, 2010 Jan. PMID 20132733
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OsAREB1 may function as a positive regulator in drought/heat stresses response, but a negative regulator in flowering time in Arabidopsis.
      Title: OsAREB1, an ABRE-binding protein responding to ABA and glucose, has multiple functions in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bZIP transcription factor 46-like
    Names
    Os06g0211200
    P0021C04.25
    putative bZIP transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      5844115..5848839
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785510.3 → XP_015640996.1  bZIP transcription factor 46-like isoform X1

      UniProtKB/Swiss-Prot
      E3TB03, Q69TW5
      UniProtKB/TrEMBL
      B9FS56
      Conserved Domains (1) summary
      cd14707
      Location:244 → 291
      bZIP_plant_BZIP46; Basic leucine zipper (bZIP) domain of uncharaterized Plant BZIP transcription factors: a DNA-binding and dimerization domain

    2. XM_066311211.1 → XP_066167308.1  bZIP transcription factor 46-like isoform X2

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials