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    LOC4340049 probable ribosome-binding factor A, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340049, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340049
    Gene description
    probable ribosome-binding factor A, chloroplastic
    Locus tag
    OSNPB_060137600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 50.7), leaves after flowering (RPKM 30.4) and 6 other tissues See more
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    Genomic context

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    See LOC4340049 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (2167434..2170009)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (2009994..2021032)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein SMALL AUXIN UP-REGULATED RNA 16 Neighboring gene uncharacterized LOC4340048 Neighboring gene GDP-mannose 4,6 dehydratase 1 Neighboring gene uncharacterized LOC136357101

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ribosomal small subunit binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable ribosome-binding factor A, chloroplastic
    Names
    OSJNBa0041F13.7-1
    Os06g0137600
    P0548D03.37-1
    ribosome-binding factor A protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      2167434..2170009
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787396.3 → XP_015642882.1  probable ribosome-binding factor A, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0WSK9, A2Y913, Q5VPH3, Q5VQ03
      Conserved Domains (1) summary
      PRK00521
      Location:41 → 167
      rbfA; 30S ribosome-binding factor RbfA
    Nucleotide Protein
    Heading Accession and Version

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