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    LOC4343517 protein VASCULATURE COMPLEXITY AND CONNECTIVITY [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343517, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343517
    Gene description
    protein VASCULATURE COMPLEXITY AND CONNECTIVITY
    Locus tag
    OSNPB_070545100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1582_D10.23
    Expression
    Biased expression in flowers (RPKM 3.8), flower buds (RPKM 2.8) and 3 other tissues See more
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    Genomic context

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    See LOC4343517 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (21810917..21812073)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (21582862..21584151)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein STRICTOSIDINE SYNTHASE-LIKE 10 Neighboring gene oxygen-evolving enhancer protein 3, chloroplastic-like Neighboring gene large ribosomal subunit protein bL28m Neighboring gene uncharacterized LOC124708996 Neighboring gene probable histone H2A.1 Neighboring gene probable histone H2A.2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein VASCULATURE COMPLEXITY AND CONNECTIVITY
    Names
    Os07g0545100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      21810917..21812073
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791094.3 → XP_015646580.1  protein VASCULATURE COMPLEXITY AND CONNECTIVITY

      UniProtKB/TrEMBL
      A0A0P0X7Z6, A2YMC4, A3BKV0, Q6ZL45
      Conserved Domains (1) summary
      pfam06749
      Location:68 → 145
      DUF1218; Protein of unknown function (DUF1218)
    Nucleotide Protein
    Heading Accession and Version

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