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    LOC9267586 pentatricopeptide repeat-containing protein At2g15980 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9267586, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC9267586
    Gene description
    pentatricopeptide repeat-containing protein At2g15980
    Locus tag
    OSNPB_120407900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC9267586 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (12776234..12781008)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (12349419..12357580)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene agamous-like MADS-box protein AGL62 Neighboring gene phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and protein-tyrosine-phosphatase PTEN2A Neighboring gene uncharacterized LOC4352055 Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC4352057

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At2g15980
    Names
    Os12g0407900
    Os12g0408100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      12776234..12781008
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066306498.1 → XP_066162595.1  pentatricopeptide repeat-containing protein At2g15980

      UniProtKB/TrEMBL
      A2ZJS4, A3CGN6, Q2QT42

    2. XM_066306496.1 → XP_066162593.1  pentatricopeptide repeat-containing protein At2g15980

      UniProtKB/TrEMBL
      A2ZJS4, A3CGN6, Q2QT42

    3. XM_026022044.2 → XP_025877829.1  pentatricopeptide repeat-containing protein At2g15980

      UniProtKB/TrEMBL
      A2ZJS4, A3CGN6, Q2QT42
      Conserved Domains (3) summary
      PLN03218
      Location:217 → 447
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:216 → 243
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:248 → 295
      PPR_2; PPR repeat family

    4. XM_015764980.3 → XP_015620466.1  pentatricopeptide repeat-containing protein At2g15980

      UniProtKB/TrEMBL
      A2ZJS4, A3CGN6, Q2QT42
      Conserved Domains (3) summary
      PLN03218
      Location:217 → 447
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:216 → 243
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:248 → 295
      PPR_2; PPR repeat family

    5. XM_066306495.1 → XP_066162592.1  pentatricopeptide repeat-containing protein At2g15980

      UniProtKB/TrEMBL
      A2ZJS4, A3CGN6, Q2QT42

    6. XM_015764982.3 → XP_015620468.1  pentatricopeptide repeat-containing protein At2g15980

      UniProtKB/TrEMBL
      A2ZJS4, A3CGN6, Q2QT42
      Conserved Domains (3) summary
      PLN03218
      Location:217 → 447
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:216 → 243
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:248 → 295
      PPR_2; PPR repeat family

    7. XM_015764976.3 → XP_015620462.1  pentatricopeptide repeat-containing protein At2g15980

      UniProtKB/TrEMBL
      A2ZJS4, A3CGN6, Q2QT42
      Conserved Domains (3) summary
      PLN03218
      Location:217 → 447
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:216 → 243
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:248 → 295
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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