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    LOC4330222 protein INAPERTURATE POLLEN1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330222, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4330222
    Gene description
    protein INAPERTURATE POLLEN1
    Locus tag
    OSNPB_020661300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    INP1; OsINP1
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    Genomic context

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    See LOC4330222 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (27265679..27266686, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (26774261..26780340, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene peroxisome biogenesis protein 19-1 Neighboring gene probable trehalose-phosphate phosphatase 1 Neighboring gene protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1 Neighboring gene uncharacterized LOC4330223

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rice pollen aperture formation is regulated by the interplay between OsINP1 and OsDAF1. Zhang X, et al. Nat Plants, 2020 Apr. PMID 32284546
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Rice pollen aperture formation is regulated by the interplay between OsINP1 and OsDAF1.
      Title: Rice pollen aperture formation is regulated by the interplay between OsINP1 and OsDAF1.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein INAPERTURATE POLLEN 1 homolog
    Names
    LOC_Os02g44250
    Os02g0661300
    P0516F12.11
    P0708H12.37
    Protein INAPERTURATE POLLEN 1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416804.1 → NP_001403733.1  protein INAPERTURATE POLLEN 1 homolog

      Status: VALIDATED

      Source sequence(s)
      AK106503, AP014958, CI772697
      UniProtKB/Swiss-Prot
      Q6H694, Q6H6M5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      27265679..27266686 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6H6M5.1 GenPept UniProtKB/Swiss-Prot:Q6H6M5

    Gene LinkOut

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