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    LOC4343861 pectinesterase QRT1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343861, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4343861
    Gene description
    pectinesterase QRT1
    Locus tag
    OSNPB_070607400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in milk grains (RPKM 8.5), mature seeds (RPKM 2.5) and 2 other tissues See more
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    Genomic context

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    See LOC4343861 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (25186106..25189322, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (24961168..24964379, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4343859 Neighboring gene uncharacterized LOC9269932 Neighboring gene uncharacterized LOC4343862 Neighboring gene dehydrodolichyl diphosphate synthase CPT3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pectinesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pectin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pectinesterase QRT1
    Names
    OSJNBa0072I06.24
    Os07g0607400
    P0493C06.38
    pectin methylesterase-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      25186106..25189322 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791229.3 → XP_015646715.1  pectinesterase QRT1 isoform X1

      UniProtKB/TrEMBL
      B9FYC2
      Conserved Domains (1) summary
      cl29893
      Location:33 → 372
      Pectinesterase

    2. XM_015791230.3 → XP_015646716.1  pectinesterase QRT1 isoform X2

      UniProtKB/TrEMBL
      B9FYC2, Q69J29, Q69RE4
      Conserved Domains (1) summary
      cl29893
      Location:74 → 322
      Pectinesterase
    Nucleotide Protein
    Heading Accession and Version

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