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    LOC4340561 amino acid permease 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340561, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340561
    Gene description
    amino acid permease 4
    Locus tag
    OSNPB_060228800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0525F01.8
    Expression
    Restricted expression toward flowers (RPKM 2.6) See more
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    Genomic context

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    See LOC4340561 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (6859228..6863308, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (6691080..6695126, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene amino acid transporter AVT1I Neighboring gene amino acid permease 8 Neighboring gene pentatricopeptide repeat-containing protein At1g62260, mitochondrial Neighboring gene ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    amino acid permease 4
    Names
    Os06g0228800
    Os06g0228850
    P0425F05.38
    putative amino acid transporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      6859228..6863308 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787257.3 → XP_015642743.1  amino acid permease 4

      UniProtKB/TrEMBL
      A2YAX9, Q67WJ4, Q67X58
      Conserved Domains (1) summary
      cl00456
      Location:44 → 488
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    Nucleotide Protein
    Heading Accession and Version

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