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    LOC4350552 CBS domain-containing protein CBSCBSPB5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350552, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4350552
    Gene description
    CBS domain-containing protein CBSCBSPB5
    Locus tag
    OSNPB_110496400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 12.2) and flowers (RPKM 2.0) See more
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    Genomic context

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    See LOC4350552 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (19536101..19539957, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (17616558..17620439, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene berberine bridge enzyme-like Cyn d 4 Neighboring gene uncharacterized LOC107277924 Neighboring gene uncharacterized LOC4350553 Neighboring gene putative squamosa promoter-binding-like protein 19

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CBS domain-containing protein CBSCBSPB5
    Names
    Os11g0496400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      19536101..19539957 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761129.3 → XP_015616615.2  CBS domain-containing protein CBSCBSPB5

      UniProtKB/TrEMBL
      B9GAS6
      Conserved Domains (3) summary
      cd06409
      Location:403 → 487
      PB1_MUG70; The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell ...
      cd04587
      Location:228 → 340
      CBS_pair_CAP-ED_DUF294_PBI_assoc; This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. ...
      cl15354
      Location:61 → 173
      CBS_pair; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...
    Nucleotide Protein
    Heading Accession and Version

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