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    LOC4340045 AT-hook motif nuclear-localized protein 18 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340045, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340045
    Gene description
    AT-hook motif nuclear-localized protein 18
    Locus tag
    OSNPB_060136900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4340045 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (2119608..2120936, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (1962033..1963584, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4340043 Neighboring gene ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic Neighboring gene kinesin-like protein KIN-UB Neighboring gene transcription initiation factor TFIID subunit 14b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An AT-hook gene is required for palea formation and floral organ number control in rice. Jin Y, et al. Dev Biol, 2011 Nov 15. PMID 21924254
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data indicate that Os06g0136900 is the DP1 gene, which encodes a nuclear-localized AT-hook DNA binding protein.
      Title: An AT-hook gene is required for palea formation and floral organ number control in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables minor groove of adenine-thymine-rich DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in vegetative to reproductive phase transition of meristem IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AT-hook motif nuclear-localized protein 18
    Names
    Os06g0136900
    P0548D03.27
    putative AT-hook protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      2119608..2120936 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786239.3 → XP_015641725.1  AT-hook motif nuclear-localized protein 18

      UniProtKB/TrEMBL
      A2Y907, Q0DES9, Q5VQ11
      Conserved Domains (1) summary
      cd11378
      Location:139 → 251
      DUF296; Domain of unknown function found in archaea, bacteria, and plants
    Nucleotide Protein
    Heading Accession and Version

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