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    LOC4336910 uncharacterized LOC4336910 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336910, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336910
    Gene description
    uncharacterized LOC4336910
    Locus tag
    OSNPB_040605200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4336910 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (31057258..31058372)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (30550788..30552133)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene xyloglucan endotransglucosylase protein 7 Neighboring gene xyloglucan endotransglucosylase protein 7 Neighboring gene WRKY transcription factor WRKY51-like Neighboring gene plant intracellular Ras-group-related LRR protein 1-like Neighboring gene calcium-transporting ATPase 5, plasma membrane-type-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aminoacyl-tRNA hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4336910
    Names
    Os04g0605200
    putative peptidyl-tRNA hydrolase PTRHD1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      31057258..31058372
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781382.3 → XP_015636868.1  uncharacterized protein LOC4336910

      UniProtKB/TrEMBL
      A0A0N7KJN1, Q7XNY2
      Conserved Domains (1) summary
      cd02429
      Location:71 → 184
      PTH2_like; Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in ...
    Nucleotide Protein
    Heading Accession and Version

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