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    LOC4346182 ankyrin repeat domain-containing protein 2A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346182, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346182
    Gene description
    ankyrin repeat domain-containing protein 2A
    Locus tag
    OSNPB_080539600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 15.5) and flower buds (RPKM 4.4) See more
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    Genomic context

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    See LOC4346182 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (27129237..27133328)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (26982598..26986691)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein Pik-2-like Neighboring gene uncharacterized LOC107278098 Neighboring gene disease resistance protein Pik-2-like Neighboring gene disease resistance protein RPM1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chloroplast targeting sequence binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein targeting to chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ankyrin repeat domain-containing protein 2A
    Names
    Os08g0539600
    P0666G10.120
    putative ankyrin domain protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      27129237..27133328
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793652.3 → XP_015649138.1  ankyrin repeat domain-containing protein 2A

      UniProtKB/TrEMBL
      B9G212, Q69U94
      Conserved Domains (3) summary
      sd00045
      Location:239 → 270
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:212 → 303
      Ank_2; Ankyrin repeats (3 copies)
      pfam17830
      Location:131 → 183
      STI1; STI1 domain
    Nucleotide Protein
    Heading Accession and Version

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