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    LOC4341498 subtilisin-like protease SBT5.3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341498, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341498
    Gene description
    subtilisin-like protease SBT5.3
    Locus tag
    OSNPB_060609301
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0490F09.3
    Expression
    Restricted expression toward flowers (RPKM 17.2) See more
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    Genomic context

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    See LOC4341498 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (25120518..25126073)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (24258552..24264028)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase RGLG2 Neighboring gene uncharacterized LOC107281192 Neighboring gene ADP-ribosylation factor GTPase-activating protein AGD12 Neighboring gene myb family transcription factor PHL7 Neighboring gene probable calcium-binding protein CML21

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    subtilisin-like protease SBT5.3
    Names
    Os06g0609301
    Os06g0609400
    P0556B08.30
    putative subtilisin-like proteinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      25120518..25126073
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785526.3 → XP_015641012.1  subtilisin-like protease SBT5.3 isoform X1

      UniProtKB/TrEMBL
      Q69V48
      Conserved Domains (4) summary
      cd04852
      Location:125 → 607
      Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
      cd02120
      Location:376 → 502
      PA_subtilisin_like; Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, ...
      pfam05922
      Location:36 → 126
      Inhibitor_I9; Peptidase inhibitor I9
      pfam17766
      Location:686 → 785
      fn3_6; Fibronectin type-III domain

    2. XM_015785527.3 → XP_015641013.1  subtilisin-like protease SBT5.3 isoform X2

      Conserved Domains (4) summary
      cd04852
      Location:124 → 606
      Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
      cd02120
      Location:375 → 501
      PA_subtilisin_like; Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, ...
      pfam05922
      Location:36 → 125
      Inhibitor_I9; Peptidase inhibitor I9
      pfam17766
      Location:685 → 784
      fn3_6; Fibronectin type-III domain
    Nucleotide Protein
    Heading Accession and Version

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