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    LOC4351276 laccase-23-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351276, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4351276
    Gene description
    laccase-23-like
    Locus tag
    OSNPB_120108000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LAC23
    Expression
    Biased expression in roots before flowering (RPKM 1.1), flower buds (RPKM 0.7) and 2 other tissues See more
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (457568..462171)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (433952..439581)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene probable leucine-rich repeat receptor-like protein kinase IMK3 Neighboring gene uncharacterized LOC107277363 Neighboring gene probable receptor-like protein kinase At5g18500 Neighboring gene uncharacterized LOC9268659

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hydroquinone:oxygen oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lignin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    laccase-23
    Names
    Benzenediol:oxygen oxidoreductase 23
    Diphenol oxidase 23
    LOC_Os12g01730
    Urishiol oxidase 23
    NP_001410221.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423292.1 → NP_001410221.1  laccase-23 precursor

      Status: VALIDATED

      Source sequence(s)
      AK109523, CI125428, CI191329, CI223502
      UniProtKB/Swiss-Prot
      A0A0P0Y608, Q2QYS3
      UniProtKB/TrEMBL
      B9GBG1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      457568..462171
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2QYS3.1 GenPept UniProtKB/Swiss-Prot:Q2QYS3

    Gene LinkOut

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