U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4340708 transcription factor TGAL3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340708, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4340708
    Gene description
    transcription factor TGAL3-like
    Locus tag
    OSNPB_060265400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1001_B06.18
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4340708 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (8961435..8964657, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (8785864..8789159, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene asparagine synthetase [glutamine-hydrolyzing] 2-like Neighboring gene uncharacterized LOC107281336 Neighboring gene protein WHAT'S THIS FACTOR 1 homolog, chloroplastic Neighboring gene protein trichome birefringence-like 19

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    transcription factor TGAL3-like
    Names
    Os06g0265400
    putative ocs-element binding factor
    transcription factor HBP-1b(c38)

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      8961435..8964657 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786621.3 → XP_015642107.1  transcription factor TGAL3-like isoform X4

      Conserved Domains (2) summary
      cd14708
      Location:235 → 287
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
      pfam14144
      Location:319 → 394
      DOG1; Seed dormancy control

    2. XM_066311921.1 → XP_066168018.1  transcription factor TGAL3-like isoform X3

    3. XM_026026030.2 → XP_025881815.1  transcription factor TGAL3-like isoform X2

      Conserved Domains (2) summary
      cd14708
      Location:234 → 286
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
      pfam14144
      Location:318 → 394
      DOG1; Seed dormancy control

    4. XM_066311920.1 → XP_066168017.1  transcription factor TGAL3-like isoform X1

    5. XM_066311922.1 → XP_066168019.1  transcription factor TGAL3-like isoform X5

      UniProtKB/Swiss-Prot
      Q5Z6N9
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials