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    LOC4329747 F-box/kelch-repeat protein At1g22040 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329747, updated on 13-Jul-2024

    Summary

    Gene symbol
    LOC4329747
    Gene description
    F-box/kelch-repeat protein At1g22040
    Locus tag
    OSNPB_020574900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 20.0), leaves after flowering (RPKM 19.4) and 6 other tissues See more
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    Genomic context

    See LOC4329747 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (22542070..22544559)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (22060763..22063331)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4329745 Neighboring gene putative ETHYLENE INSENSITIVE 3-like 4 protein Neighboring gene uncharacterized LOC4329748 Neighboring gene phosphopantothenate--cysteine ligase 1-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    F-box/kelch-repeat protein At1g22040
    Names
    F-box domain and kelch repeat containing protein FBK9
    Os02g0574900
    P0703B01.15
    kelch repeat-containing F-box-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      22542070..22544559
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771927.3XP_015627413.1  F-box/kelch-repeat protein At1g22040 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VKQ1, Q0E065, Q69S84
      Conserved Domains (4) summary
      PHA03098
      Location:176326
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:175217
      Kelch; KELCH repeat [structural motif]
      pfam00646
      Location:4282
      F-box; F-box domain
      pfam01344
      Location:173217
      Kelch_1; Kelch motif
    2. XM_015771928.3XP_015627414.1  F-box/kelch-repeat protein At1g22040 isoform X2

      Conserved Domains (3) summary
      sd00038
      Location:175217
      Kelch; KELCH repeat [structural motif]
      pfam00646
      Location:4282
      F-box; F-box domain
      pfam01344
      Location:173217
      Kelch_1; Kelch motif