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    LOC4341850 transcription factor MYB123 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341850, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4341850
    Gene description
    transcription factor MYB123
    Locus tag
    OSNPB_060679400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 36.5) and flowers (RPKM 6.4) See more
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    Genomic context

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    See LOC4341850 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (29136896..29139612, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (28270266..28272927, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA Z278 Neighboring gene small nucleolar RNA snoR97 Neighboring gene probable beta-1,3-galactosyltransferase 2 Neighboring gene uncharacterized LOC107278639

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor MYB123; uncharacterized protein LOC4341850
    Names
    Os06g0679400
    P0003H08.13
    putative transcription factor GAMyb

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      29136896..29139612 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786106.3 → XP_015641592.1  uncharacterized protein LOC4341850 isoform X1

      UniProtKB/TrEMBL
      A0A0P0X0B0, B9FQH9, Q655P0
      Conserved Domains (1) summary
      PLN03091
      Location:26 → 136
      PLN03091; hypothetical protein; Provisional

    2. XM_066311935.1 → XP_066168032.1  transcription factor MYB123 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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