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    LOC4332827 BTB/POZ domain-containing protein At1g03010 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332827, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4332827
    Gene description
    BTB/POZ domain-containing protein At1g03010
    Locus tag
    OSNPB_030347700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 1.5), flower buds (RPKM 0.2) and 1 other tissue See more
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    Genomic context

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    See LOC4332827 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (13080084..13082754, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (13024328..13027448, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene bidirectional sugar transporter SWEET12-like Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene CRS2-like protein, chloroplastic Neighboring gene tau-cadinol synthase-like Neighboring gene tau-cadinol synthase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    BTB/POZ domain-containing protein At1g03010
    Names
    Bric-a-Brac, Tramtrack, Broad Complex BTB domain BTBN6
    Os03g0347700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      13080084..13082754 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773604.3 → XP_015629090.1  BTB/POZ domain-containing protein At1g03010 isoform X1

      UniProtKB/TrEMBL
      A2XGM8, A3AHW0, Q0DRX4, Q10LI7
      Conserved Domains (2) summary
      cl38908
      Location:34 → 137
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
      pfam03000
      Location:223 → 501
      NPH3; NPH3 family

    2. XM_015773605.3 → XP_015629091.1  BTB/POZ domain-containing protein At1g03010 isoform X2

      UniProtKB/TrEMBL
      A2XGM8, A3AHW0
      Conserved Domains (2) summary
      cl38908
      Location:34 → 133
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
      pfam03000
      Location:219 → 497
      NPH3; NPH3 family
    Nucleotide Protein
    Heading Accession and Version

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