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    LOC4324182 probable protein phosphatase 2C 8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324182, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4324182
    Gene description
    probable protein phosphatase 2C 8
    Locus tag
    OSNPB_010656200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsPP2C08
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 26.1), roots before flowering (RPKM 18.1) and 6 other tissues See more
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    Genomic context

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    See LOC4324182 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (27235228..27240583)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (26652949..26658313)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112937666 Neighboring gene long chain acyl-CoA synthetase 4 Neighboring gene transcription factor WRKY19-like Neighboring gene uncharacterized LOC136357203 Neighboring gene COP1-interactive protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Functional characterization and reconstitution of ABA signaling components using transient gene expression in rice protoplasts. Kim N, et al. Front Plant Sci, 2015. PMID 26300907, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cation binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-threonine dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable protein phosphatase 2C 8
    Names
    LOC_Os01g46760
    OSJNBa0049H05.30
    protein phosphatase 2C-like
    NP_001414991.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428062.1 → NP_001414991.1  probable protein phosphatase 2C 8

      Status: VALIDATED

      Source sequence(s)
      AK068272, CI744143
      UniProtKB/Swiss-Prot
      A0A0P0V628, Q5SN75
      UniProtKB/TrEMBL
      B8A6V5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      27235228..27240583
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5SN75.1 GenPept UniProtKB/Swiss-Prot:Q5SN75

    Gene LinkOut

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    Research Materials