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    LOC4329395 uncharacterized LOC4329395 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329395, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4329395
    Gene description
    uncharacterized LOC4329395
    Locus tag
    OSNPB_020492900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 10.1), flower buds (RPKM 5.7) and 1 other tissue See more
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    Genomic context

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    See LOC4329395 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (17705840..17715665, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (17245009..17254909, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene hsp70-Hsp90 organizing protein 1-like Neighboring gene uncharacterized LOC107277270 Neighboring gene uncharacterized LOC9269313 Neighboring gene FBD-associated F-box protein At4g13985-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4329395
    Names
    Os02g0492900
    P0579G08.31
    putative ankyrin-like protein
    serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      17705840..17715665 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771259.3 → XP_015626745.1  uncharacterized protein LOC4329395

      UniProtKB/TrEMBL
      B8AIC8
      Conserved Domains (5) summary
      PHA02875
      Location:87 → 269
      PHA02875; ankyrin repeat protein; Provisional
      TIGR00990
      Location:270 → 424
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      sd00006
      Location:307 → 332
      TPR; TPR repeat [structural motif]
      sd00045
      Location:87 → 117
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:91 → 181
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version

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