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    LOC4330378 E3 ubiquitin-protein ligase PUB23 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330378, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4330378
    Gene description
    E3 ubiquitin-protein ligase PUB23
    Locus tag
    OSNPB_020690600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1743_B12.39
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    Genomic context

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    See LOC4330378 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (28840782..28842274)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (28351856..28353552)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355386 Neighboring gene probable protein phosphatase 2C 26 Neighboring gene AP-2 complex subunit mu Neighboring gene acetylornithine deacetylase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase PUB23
    Names
    Os02g0690600
    putative U-box protein
    putative immediate-early fungal elicitor protein CMPG1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      28840782..28842274
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769279.3 → XP_015624765.1  E3 ubiquitin-protein ligase PUB23

      UniProtKB/TrEMBL
      B8AGS6, B9F1W7, Q0DYI2, Q6ZGX9
      Conserved Domains (1) summary
      smart00504
      Location:11 → 74
      Ubox; Modified RING finger domain
    Nucleotide Protein
    Heading Accession and Version

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