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    LOC9270381 probable GTP diphosphokinase CRSH3, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270381, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC9270381
    Gene description
    probable GTP diphosphokinase CRSH3, chloroplastic
    Locus tag
    OSNPB_050161800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CRSH3; OsCRSH3
    Expression
    Restricted expression toward roots before flowering (RPKM 10.7) See more
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    Genomic context

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    See LOC9270381 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (3650843..3659352)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (3638102..3640506)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4337889 Neighboring gene probable GTP diphosphokinase CRSH2, chloroplastic Neighboring gene peroxidase 5 Neighboring gene transfer RNA arginine (anticodon UCG)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Calcium-activated (p)ppGpp synthetase in chloroplasts of land plants. Tozawa Y, et al. J Biol Chem, 2007 Dec 7. PMID 17938177

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in guanosine tetraphosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GTP diphosphokinase CRSH3, chloroplastic
    Names
    Calcium-activated RelA/Spot homolog 3
    LOC_Os05g06940
    OSJNBb0099P06.1
    calcium activating hyperphosphorylated guanine synthetase
    gTP diphosphokinase CRSH3, chloroplastic
    ppGpp synthetase CRSH3
    NP_001391825.1
    XP_066166390.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404896.1 → NP_001391825.1  GTP diphosphokinase CRSH3, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AB298325, AK289182, BT130508, CI222528, CI236301
      UniProtKB/Swiss-Prot
      A0A0N7KK72, A7VL54, Q75IS2
      UniProtKB/TrEMBL
      A2Y0P4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      3650843..3659352
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066310293.1 → XP_066166390.1  GTP diphosphokinase CRSH3, chloroplastic isoform X1

      UniProtKB/Swiss-Prot
      A0A0N7KK72, A7VL54, Q75IS2
      UniProtKB/TrEMBL
      A2Y0P4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q75IS2.1 GenPept UniProtKB/Swiss-Prot:Q75IS2

    Gene LinkOut

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