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    LOC4337280 transcription factor IBH1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337280, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4337280
    Gene description
    transcription factor IBH1-like
    Locus tag
    OSNPB_040660100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    IBH1; OsIBH1; BHLH175; 24K23.21; OsbHLH175
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    Genomic context

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    See LOC4337280 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (34202119..34203428, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (33682212..33683810, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene protein PELOTA 1 Neighboring gene uncharacterized LOC136356250 Neighboring gene uncharacterized LOC4337281 Neighboring gene probable inactive UDP-arabinopyranose mutase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor IBH1
    Names
    Basic helix-loop-helix protein 175
    LOC_Os04g56500
    OSJNBa0015K02.11
    Protein ILI1-BINDING BHLH 1
    bHLH transcription factor bHLH175

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419908.1 → NP_001406837.1  transcription factor IBH1

      Status: VALIDATED

      Source sequence(s)
      AK109923, CI188192, CI410065, CI765786
      UniProtKB/Swiss-Prot
      A0A0P0WFY9, B8AW07, Q01I07, Q7XR02

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      34202119..34203428 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XR02.2 GenPept UniProtKB/Swiss-Prot:Q7XR02

    Gene LinkOut

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