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    LOC4328121 peptidyl-prolyl cis-trans isomerase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328121, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328121
    Gene description
    peptidyl-prolyl cis-trans isomerase
    Locus tag
    OSNPB_020121300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1020_C02.14
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    Genomic context

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    See LOC4328121 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (1122945..1123830)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (1116046..1116972)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene glycine-rich protein 2 Neighboring gene uncharacterized LOC4328120 Neighboring gene auxilin-related protein 1 Neighboring gene uncharacterized LOC4328122

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Peptidyl-prolyl isomerization targets rice Aux/IAAs for proteasomal degradation during auxin signalling. Jing H, et al. Nat Commun, 2015 Jun 22. PMID 26096057
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein peptidyl-prolyl isomerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptidyl-prolyl cis-trans isomerase
    Names
    OSJNBb0088N06.23
    Os02g0121300
    cyclophilin 2
    peptidylprolyl isomerase Cyp2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      1122945..1123830
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769741.3 → XP_015625227.1  peptidyl-prolyl cis-trans isomerase

      UniProtKB/TrEMBL
      A0A0P0VE12, Q0E4F7, Q1KL27, Q40673, Q40674, Q6ZH98
      Conserved Domains (1) summary
      cd01926
      Location:5 → 169
      cyclophilin_ABH_like; Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding ...
    Nucleotide Protein
    Heading Accession and Version

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