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    LOC4336857 probable transcription factor FL [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336857, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4336857
    Gene description
    probable transcription factor FL
    Locus tag
    OSNPB_040598300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    FL; LFY; OSL; RFL; APO2; OsJ_16017
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    Genomic context

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    See LOC4336857 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (30688844..30692259, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (30182587..30186011, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene late embryogenesis abundant protein At5g17165 Neighboring gene large ribosomal subunit protein uL11 Neighboring gene wall-associated receptor kinase 17 Neighboring gene wall-associated receptor kinase 17 Neighboring gene uncharacterized LOC136356252

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The far-upstream regulatory region of RFL is required for its precise spatial-temporal expression for floral development in rice. Lou S, et al. Plant Mol Biol, 2017 Jan. PMID 27838799
    2. Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation. Kyozuka J, et al. Proc Natl Acad Sci U S A, 1998 Mar 3. PMID 9482818, Free PMC Article
    3. The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice. Huang L, et al. Plant Cell, 2021 May 31. PMID 33693937
    4. Slow co-evolution of the MAGO and Y14 protein families is required for the maintenance of their obligate heterodimerization mode. Gong P, et al. PLoS One, 2014. PMID 24416299, Free PMC Article
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice.
      Title: The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice.
    2. The far-upstream region of RFL may contain potential cis element(s) that are critical to define the precise spatial-temporal expression pattern of RFL for its function in floral development.
      Title: The far-upstream regulatory region of RFL is required for its precise spatial-temporal expression for floral development in rice.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable transcription factor FL
    Names
    FLO/LFY-like protein
    LOC_Os04g51000
    OSJNba0093F12.17
    protein ABERRANT PANICLE ORGANIZATION 2
    protein leafy

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402417.1 → NP_001389346.1  probable transcription factor FL

      Status: VALIDATED

      Source sequence(s)
      AB005620, AP014960, CI225281
      UniProtKB/Swiss-Prot
      A3AX14, Q0JAI1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      30688844..30692259 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0JAI1.2 GenPept UniProtKB/Swiss-Prot:Q0JAI1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials