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    LOC4331993 BTB/POZ domain-containing protein NPY4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331993, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4331993
    Gene description
    BTB/POZ domain-containing protein NPY4
    Locus tag
    OSNPB_030205700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 4.7), flower buds (RPKM 3.3) and 3 other tissues See more
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    Genomic context

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    See LOC4331993 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (5576195..5581563)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (5528918..5534404)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene DNA repair protein UVH3 Neighboring gene membrane-associated progesterone-binding protein 4 Neighboring gene probable N-acetyltransferase HLS1 Neighboring gene QWRF motif-containing protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BTB/POZ domain-containing protein NPY4
    Names
    BTB/POZ domain-containing protein NPY2
    Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain BTBN4
    Os03g0205700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      5576195..5581563
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772542.3 → XP_015628028.1  BTB/POZ domain-containing protein NPY4

      UniProtKB/TrEMBL
      B8AQG0, B9F627, Q10Q87
      Conserved Domains (2) summary
      cl38908
      Location:22 → 123
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
      pfam03000
      Location:210 → 458
      NPH3; NPH3 family

    2. XM_066308851.1 → XP_066164948.1  BTB/POZ domain-containing protein NPY4

      UniProtKB/TrEMBL
      B8AQG0, B9F627, Q10Q87

    3. XM_026024287.2 → XP_025880072.1  BTB/POZ domain-containing protein NPY4

      UniProtKB/TrEMBL
      B8AQG0, B9F627, Q10Q87
      Conserved Domains (2) summary
      cl38908
      Location:22 → 123
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
      pfam03000
      Location:210 → 458
      NPH3; NPH3 family

    4. XM_015772544.3 → XP_015628030.1  BTB/POZ domain-containing protein NPY4

      UniProtKB/TrEMBL
      B8AQG0, B9F627, Q10Q87
      Conserved Domains (2) summary
      cl38908
      Location:22 → 123
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
      pfam03000
      Location:210 → 458
      NPH3; NPH3 family
    Nucleotide Protein
    Heading Accession and Version

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