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    LOC4343340 protein FLX-like 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343340, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343340
    Gene description
    protein FLX-like 1
    Locus tag
    OSNPB_070508200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1163_G04.104
    Expression
    Ubiquitous expression in mature seeds (RPKM 20.4), flower buds (RPKM 19.1) and 6 other tissues See more
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    Genomic context

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    See LOC4343340 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (19531204..19535856)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (19304825..19309483)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 Neighboring gene SH3 domain-containing protein 3 Neighboring gene mitotic checkpoint serine/threonine-protein kinase BUB1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein FLX-like 1
    Names
    Os07g0508200
    myosin-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      19531204..19535856
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792098.2 → XP_015647584.1  protein FLX-like 1

      UniProtKB/TrEMBL
      A3BK62, B8B6H3, Q0D666, Q7XIR7
      Conserved Domains (1) summary
      COG1196
      Location:107 → 287
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    Nucleotide Protein
    Heading Accession and Version

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