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    LOC4337198 protein BUD31 homolog 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337198, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337198
    Gene description
    protein BUD31 homolog 1-like
    Locus tag
    OSNPB_040646100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 63.3), flower buds (RPKM 56.6) and 6 other tissues See more
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    Genomic context

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    See LOC4337198 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (33374972..33378483, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (32868115..32871642, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9266804 Neighboring gene uncharacterized LOC107277445 Neighboring gene transfer RNA serine (anticodon UGA) Neighboring gene uncharacterized LOC136356349

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein BUD31 homolog 1-like
    Names
    Os04g0646100
    protein BUD31 homolog 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      33374972..33378483 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781425.3 → XP_015636911.1  protein BUD31 homolog 1-like

      UniProtKB/Swiss-Prot
      B7ECV3, Q0J9K4, Q7XQE3, Q94DE2
      UniProtKB/TrEMBL
      A2WX57, B8AV95
      Conserved Domains (1) summary
      pfam01125
      Location:1 → 143
      G10; G10 protein

    2. XM_015781424.3 → XP_015636910.1  protein BUD31 homolog 1-like

      UniProtKB/Swiss-Prot
      B7ECV3, Q0J9K4, Q7XQE3, Q94DE2
      UniProtKB/TrEMBL
      A2WX57, B8AV95
      Conserved Domains (1) summary
      pfam01125
      Location:1 → 143
      G10; G10 protein
    Nucleotide Protein
    Heading Accession and Version

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