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    LOC4346925 glucan endo-1,3-beta-D-glucosidase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346925, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4346925
    Gene description
    glucan endo-1,3-beta-D-glucosidase
    Locus tag
    OSNPB_090379900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4346925 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (17160230..17163700, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (12802779..12805276, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene UDP-glycosyltransferase 90A1-like Neighboring gene homeobox-leucine zipper protein HOX25 Neighboring gene hexanoyl-CoA synthase Neighboring gene protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables endo-1,3(4)-beta-glucanase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glucan endo-1,3-beta-D-glucosidase
    Names
    Os09g0379900
    P0027G10.24
    probable endo-1,3(4)-beta-glucanase ARB_01444
    putative beta-glucan binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      17160230..17163700 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756826.3 → XP_015612312.1  glucan endo-1,3-beta-D-glucosidase

      UniProtKB/TrEMBL
      Q0J250, Q6H5B5
      Conserved Domains (2) summary
      pfam03639
      Location:75 → 361
      Glyco_hydro_81; Glycosyl hydrolase family 81
      pfam17652
      Location:364 → 716
      Glyco_hydro81C; Glycosyl hydrolase family 81 C-terminal domain

    2. XM_066303908.1 → XP_066160005.1  glucan endo-1,3-beta-D-glucosidase

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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