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    LOC4325200 galactinol--sucrose galactosyltransferase-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325200, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325200
    Gene description
    galactinol--sucrose galactosyltransferase-like
    Locus tag
    OSNPB_010170000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RFS; OsJ_00538; P0583G08.2; OJ1276_B06.38
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    Genomic context

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    See LOC4325200 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (3607196..3610947, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (3598449..3602206, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene tryptophan aminotransferase-related protein 2-like Neighboring gene protein transport protein sec31 Neighboring gene uncharacterized LOC136354947 Neighboring gene SUPPRESSOR OF ABI3-5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of raffinose synthase from rice (Oryza sativa L. var. Nipponbare). Li S, et al. Biotechnol Lett, 2007 Apr. PMID 17206375
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables galactinol-sucrose galactosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    galactinol--sucrose galactosyltransferase
    Names
    LOC_Os01g07530
    Raffinose synthase
    putative alkaline alpha galactosidase I
    NP_001396347.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409418.1 → NP_001396347.1  galactinol--sucrose galactosyltransferase

      Status: VALIDATED

      Source sequence(s)
      AP014957, CB655597, CI136317, CI137434, CI140062, CI156577, CI190209, CI195472

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      3607196..3610947 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5VQG4.1 GenPept UniProtKB/Swiss-Prot:Q5VQG4

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