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    LOC4331246 inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331246, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331246
    Gene description
    inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630
    Locus tag
    OSNPB_020830700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1124_D06.24
    Expression
    Biased expression in flower buds (RPKM 4.2), flowers (RPKM 2.6) and 2 other tissues See more
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    Genomic context

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    See LOC4331246 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (36204482..36209742, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35705657..35710886, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At3g62890 Neighboring gene probable cytosolic oligopeptidase A Neighboring gene two-component response regulator ORR3 Neighboring gene uncharacterized LOC107276946 Neighboring gene uncharacterized LOC4331247 Neighboring gene serine/threonine-protein phosphatase 7 long form homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630
    Names
    Os02g0830700
    receptor kinase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      36204482..36209742 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769771.3 → XP_015625257.1  inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630

      UniProtKB/TrEMBL
      A3AD02
      Conserved Domains (3) summary
      PLN00113
      Location:85 → 214
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:77 → 100
      LRR_RI; leucine-rich repeat [structural motif]
      cl21453
      Location:382 → 646
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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