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    LOC4323863 ubiquitin carboxyl-terminal hydrolase 14 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4323863, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4323863
    Gene description
    ubiquitin carboxyl-terminal hydrolase 14
    Locus tag
    OSNPB_010177200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4323863 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (3996595..4005325)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (3986617..3995353)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene BES1/BZR1 homolog protein 4 Neighboring gene transcriptional corepressor LEUNIG Neighboring gene gibberellin 3-beta-dioxygenase 2-like Neighboring gene ABC transporter G family member 31-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin carboxyl-terminal hydrolase 14
    Names
    Os01g0177200
    P0013F10.24
    putative Ubiquitin isopeptidase T; Ubiquitin-specific protease-5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      3996595..4005325
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766032.3 → XP_015621518.1  ubiquitin carboxyl-terminal hydrolase 14

      UniProtKB/TrEMBL
      A0A0P0UZE2, B8ADJ1, Q0JQ79, Q5VRV7
      Conserved Domains (2) summary
      COG5207
      Location:6 → 794
      UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
      cd02658
      Location:312 → 792
      Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    Nucleotide Protein
    Heading Accession and Version

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