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    LOC4331185 ubiquitin carboxyl-terminal hydrolase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331185, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4331185
    Gene description
    ubiquitin carboxyl-terminal hydrolase 2
    Locus tag
    OSNPB_020822200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1119_A01.19-1
    Expression
    Ubiquitous expression in flower buds (RPKM 35.6), mature seeds (RPKM 34.9) and 6 other tissues See more
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    Genomic context

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    See LOC4331185 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (35792139..35795175)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35293382..35296571)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4331183 Neighboring gene silicon efflux transporter LSI2-like Neighboring gene protein BTR1 Neighboring gene NAC domain-containing protein 78

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin carboxyl-terminal hydrolase 2
    Names
    Os02g0822200
    P0474F11.34-1
    putative ubiquitin C-terminal hydrolase
    putative ubitquitin C-terminal hydrolase
    ubiquitin carboxyl-terminal hydrolase isozyme L5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      35792139..35795175
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771981.3 → XP_015627467.1  ubiquitin carboxyl-terminal hydrolase 2 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VRF4, A2XB54, A3ACT2, Q6K6Z5
      Conserved Domains (2) summary
      cd09617
      Location:3 → 220
      Peptidase_C12_UCH37_BAP1; Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families UCH37 (UCH-L5) and BAP1
      pfam18031
      Location:266 → 311
      UCH_C; Ubiquitin carboxyl-terminal hydrolases

    2. XM_015771983.3 → XP_015627469.1  ubiquitin carboxyl-terminal hydrolase 2 isoform X2

      UniProtKB/TrEMBL
      B7E2T1
      Conserved Domains (1) summary
      cd09617
      Location:9 → 185
      Peptidase_C12_UCH37_BAP1; Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families UCH37 (UCH-L5) and BAP1

    3. XM_015771982.3 → XP_015627468.1  ubiquitin carboxyl-terminal hydrolase 2 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VRF4, A2XB54, A3ACT2, Q6K6Z5
      Conserved Domains (2) summary
      cd09617
      Location:3 → 220
      Peptidase_C12_UCH37_BAP1; Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families UCH37 (UCH-L5) and BAP1
      pfam18031
      Location:266 → 311
      UCH_C; Ubiquitin carboxyl-terminal hydrolases

    4. XM_066307398.1 → XP_066163495.1  ubiquitin carboxyl-terminal hydrolase 2 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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